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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_611927_615601_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
611927 - 615601
Intron Length:
3675

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATGCAC
5'SS Class:
major
3'SS Sequence:
TTTTTCTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TGTTCTTGGACT
Flanking Amino Acid:
DLVSHSPNQSDLNHSGLGSH
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
61.9
38.4
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
90
0.9
0.6
89.8
18.6
Minor 5ss
25.7
-2.8
3.1
32.4
42.5
Minor BPS
69.6
0.7
1.4
84.78
35.4

Associated Gene:

Gene:
TNRC6A
Ensembl Gene ID:
ENSAPLG00000009978
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010410
594145 - 629519
35375