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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_611927_619560_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
611927 - 619560
Intron Length:
7634

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TGTTCTTGGACT
Flanking Amino Acid:
EVPNSSKKQPDLNHSGLGSH
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.1
37.5
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
90
0.9
0.6
89.8
18.6
Minor 5ss
23.1
-3.1
3.2
27.7
44.2
Minor BPS
69.6
0.7
1.4
84.78
35.4

Associated Gene:

Gene:
TNRC6A
Ensembl Gene ID:
ENSAPLG00000009978
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029030
594145 - 629519
35375