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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_6125198_6126212_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
6125198 - 6126212
Intron Length:
1015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGACCT
5'SS Class:
strong_major
3'SS Sequence:
TATCCTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CTTTTCTAAAAA
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
69
41.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
80
0.67
0.9
76.9
36.8
Minor 5ss
33.2
-1.9
3.4
48.6
47.1
Minor BPS
59.9
0.31
1.8
71.75
40.6

Associated Gene:

Gene:
PDGFA
Ensembl Gene ID:
ENSAPLG00000007507
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007807
6105138 - 6126358
21221