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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_6131604_6134297_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
6131604 - 6134297
Intron Length:
2694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCGCAC
U12 Branch Point Sequence:
TCCTTCGCACTT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.9
38.6
Major BPS
60.1
0.25
1.4
71.3
36.7
Major PPT
84.1
0.77
0.7
80.6
24.7
Minor 5ss
35.4
-1.7
3
42
44.5
Minor BPS
41.3
-0.5
2.3
58.48
45.6

Associated Gene:

Gene:
PDGFA
Ensembl Gene ID:
ENSAPLG00000007507
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031598
6105138 - 6137037
31900