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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_6131604_6137313_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
6131604 - 6137313
Intron Length:
5710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTTCCACAACT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.9
38.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
83.7
0.76
0.8
77.6
30.4
Minor 5ss
35.4
-1.7
3
42
44.5
Minor BPS
71.7
0.76
1.8
93.85
33.4

Associated Gene:

Gene:
PDGFA
Ensembl Gene ID:
ENSAPLG00000007507
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044792
6105138 - 6137514
32377