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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_6279543_6291258_F

Intron Information:

Intron Rank:
147051
Intron Class:
major
Intron Phase:
Intron Coordinates:
6279543 - 6291258
Intron Length:
11716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTATT
5'SS Class:
major
3'SS Sequence:
TTCTCTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAAAGAT
U12 Branch Point Sequence:
AGAAAGATACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.2
82
38.1
Major BPS
46.8
-0.2
1.2
41.1
39.7
Major PPT
87.6
0.85
0.6
84.4
23.5
Minor 5ss
46.1
-0.4
2.9
68.9
41.7
Minor BPS
35.3
-1
2.3
51.17
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029188
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020122
6279344 - 6291369
12026