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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_6286300_6291232_R

Intron Information:

Intron Rank:
130927
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
6286300 - 6291232
Intron Length:
4933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTTTC
5'SS Class:
weak_major
3'SS Sequence:
GTCTTATCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TGTTCTCTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
74.9
36.3
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
75.7
0.58
0.8
70.4
35.3
Minor 5ss
72.3
0.75
1.7
78.8
35.5
Minor BPS
66.8
0.61
1.6
84.88
35.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017665
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021786
6286180 - 6298157
11978
ENSAPLT00000035184
6286180 - 6300453
14274
ENSAPLT00000022867
6286180 - 6298157
11978