Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_6296453_6296619_R

Intron Information:

Intron Rank:

130929

Intron Class:

major

Intron Phase:

Intron Coordinates:

6296453 - 6296619

Intron Length:

167

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTGAGAATT

5'SS Class:

strong_major

3'SS Sequence:

CCTGCTTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCTCCAC

U12 Branch Point Sequence:

GTGGCCTCCACC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

0.9

82.4

29.7

Major BPS

-0.1

1.3

55.7

39.5

Major PPT

82.7

0.74

0.8

79.8

32.2

Minor 5ss

34.1

-1.8

3.2

46.4

Minor BPS

47.4

-0.2

2.1

59.13

45.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017665

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035184

6286180 - 6300453

14274

ENSAPLT00000021786

6286180 - 6298157

11978