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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_6305716_6309865_F

Intron Information:

Intron Rank:
134992
Intron Class:
major
Intron Phase:
Intron Coordinates:
6305716 - 6309865
Intron Length:
4150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATACA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTGTCTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
83.1
28.6
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
87.5
0.84
0.7
85
28.5
Minor 5ss
35.4
-1.7
2.7
43.5
43.6
Minor BPS
66.9
0.61
1.7
83.09
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022624
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022998
6301031 - 6310026
8996
ENSAPLT00000019063
6305109 - 6310026
4918
ENSAPLT00000039194
6305109 - 6310026
4918
ENSAPLT00000026060
6304067 - 6310026
5960