About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_6330499_6330846_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6330499 - 6330846
Intron Length:
348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACCT
5'SS Class:
strong_major
3'SS Sequence:
TAAATAAATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CTGCCTTTAAAT
Flanking Amino Acid:
NLSLNSCFVKVPRTEGNEKG
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
78.1
36.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
60.7
0.24
1.1
52.5
44.8
Minor 5ss
34.6
-1.8
3.2
49.1
46.6
Minor BPS
64
0.52
1.5
74.41
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007505
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007778
6326482 - 6332319
5838