About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_6362427_6362919_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6362427 - 6362919
Intron Length:
493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TACCTTTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTCTTACCT
Flanking Amino Acid:
TFIIHLDNGRGFGKYSHDEL
Intron Amino Acid Position:
450

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
78.8
35.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
69.5
0.44
1
65.9
38.5
Minor 5ss
36.6
-1.5
2.6
39.1
38.9
Minor BPS
73.6
0.82
1.5
88.33
36.7

Associated Gene:

Gene:
FAM20C
Ensembl Gene ID:
ENSAPLG00000007305
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007589
6361523 - 6418103
56581