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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_6364708_6365295_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6364708 - 6365295
Intron Length:
588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTAGT
5'SS Class:
major
3'SS Sequence:
TCGGCTTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
TGTCACATAAAA
Flanking Amino Acid:
RRSYHKRKKAEWEVDPDYCE
Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1
71.6
40.2
Major BPS
70.2
0.5
1
72.1
33
Major PPT
77.6
0.62
0.9
68.7
42
Minor 5ss
33.3
-1.9
2.8
38.9
40.3
Minor BPS
49.1
-0
1.9
65.86
39.2

Associated Gene:

Gene:
FAM20C
Ensembl Gene ID:
ENSAPLG00000007305
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007589
6361523 - 6418103
56581