Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_6365477_6372954_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6365477 - 6372954

Intron Length:

7478

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGTCTTG

5'SS Class:

major

3'SS Sequence:

CTTTATTTGCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TTTTCTTTATTT

Flanking Amino Acid:

KLWRTFFISPANNICFYGEC

Intron Amino Acid Position:

326

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.8

0.47

1.1

62.5

44.6

Major BPS

90.4

0.7

90.2

19.3

Major PPT

78.5

0.64

72.8

41.9

Minor 5ss

46.1

-0.4

3.1

64.1

47.4

Minor BPS

76.2

0.9

1.4

91.47

32.2

Associated Gene:

Gene:

FAM20C

Ensembl Gene ID:

ENSAPLG00000007305

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007589

6361523 - 6418103

56581