About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_6373071_6374733_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6373071 - 6374733
Intron Length:
1663

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTACATAAACT
Flanking Amino Acid:
NAEIAAFHLDRILDFRRVPP
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.6
1.15
0.7
84.1
34
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
83.3
0.75
0.7
76.2
32.4
Minor 5ss
24.7
-2.9
3.6
32.7
42.2
Minor BPS
62.7
0.48
2
86.22
39.4

Associated Gene:

Gene:
FAM20C
Ensembl Gene ID:
ENSAPLG00000007305
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007589
6361523 - 6418103
56581