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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_6458072_6460322_F

Intron Information:

Intron Rank:
143968
Intron Class:
major
Intron Phase:
Intron Coordinates:
6458072 - 6460322
Intron Length:
2251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTAG
5'SS Class:
strong_major
3'SS Sequence:
AACTTCTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
TTGTCTCTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
76.8
34.6
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
79.7
0.67
0.9
73.5
36
Minor 5ss
39.6
-1.2
2.8
49.3
46.9
Minor BPS
72.3
0.78
1.6
88.53
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027600
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033468
6457778 - 6461749
3972