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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_6460392_6461588_F

Intron Information:

Intron Rank:
143969
Intron Class:
major
Intron Phase:
Intron Coordinates:
6460392 - 6461588
Intron Length:
1197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ACATTTGTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
70.2
35.9
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
87.1
0.83
0.6
85.7
21.4
Minor 5ss
29.2
-2.4
2.8
32.4
36.1
Minor BPS
47.9
-0
2
64.61
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027600
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033468
6457778 - 6461749
3972