Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_6473189_6479546_F

Intron Information:

Intron Rank:

131153

Intron Class:

major

Intron Phase:

Intron Coordinates:

6473189 - 6479546

Intron Length:

6358

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGGCTA

5'SS Class:

strong_major

3'SS Sequence:

TTGTTTCCACCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTAAAT

U12 Branch Point Sequence:

AGGCTCTAAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.9

0.75

71.4

40.1

Major BPS

69.8

0.49

1.1

75.5

35.2

Major PPT

77.4

0.62

0.9

71.4

39.5

Minor 5ss

40.4

-1.1

3.3

55.6

48.6

Minor BPS

50.2

0.08

1.6

63.92

40.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020454

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046949

6472175 - 6480358

8184