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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_64824_70009_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
64824 - 70009
Intron Length:
5186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTTGTGT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
85.3
32.2
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
84.3
0.77
0.8
76.4
37.7
Minor 5ss
43.9
-0.7
2.9
60.2
44.5
Minor BPS
43.2
-0.4
3.5
77.64
39.7

Associated Gene:

Gene:
IL21R
Ensembl Gene ID:
ENSAPLG00000015284
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020960
51741 - 71316
19576