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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_650358_662745_R

Intron Information:

Intron Rank:
144359
Intron Class:
major
Intron Phase:
Intron Coordinates:
650358 - 662745
Intron Length:
12388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGGCAG
5'SS Class:
major
3'SS Sequence:
CTCTCTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTGTTTTTAGTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.9
0.42
1.1
54.6
44.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
85.4
0.8
0.7
80.1
25.2
Minor 5ss
32.3
-2
3.3
44.1
44.4
Minor BPS
54
0.11
1.5
60.78
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024932
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034661
648647 - 663008
14362