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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_6643334_6643737_F

Intron Information:

Intron Rank:
127638
Intron Class:
major
Intron Phase:
Intron Coordinates:
6643334 - 6643737
Intron Length:
404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCAATCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTTTGCTCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
74.9
35.3
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
72.1
0.5
0.9
65.3
33.8
Minor 5ss
29.4
-2.4
3.1
33.3
41.7
Minor BPS
52.3
0.15
2.2
79.99
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018811
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047222
6642995 - 6644515
1521