Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_6878779_6879516_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6878779 - 6879516

Intron Length:

738

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATTTGGC

5'SS Class:

major

3'SS Sequence:

TTTGAATCCTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

TTTTTTTGAATC

Flanking Amino Acid:

VWFRENWHEEVLRQLQQGLA

Intron Amino Acid Position:

3313

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.9

0.61

65.1

39.3

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

0.45

0.9

67.3

39.1

Minor 5ss

39.2

-1.2

3.1

44.1

Minor BPS

69.9

0.6

1.3

78.42

30.8

Associated Gene:

Gene:

TRRAP

Ensembl Gene ID:

ENSAPLG00000006552

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020632

6863140 - 6953744

90605

ENSAPLT00000006923

6863140 - 6953744

90605