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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_6879663_6880795_R

Intron Information:

Intron Rank:
63
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6879663 - 6880795
Intron Length:
1133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGCTTG
5'SS Class:
major
3'SS Sequence:
CACTCTGCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGGAAA
U12 Branch Point Sequence:
TCAGTTGGAAAT
Flanking Amino Acid:
KIEQRERYKSDPGPIRATAP
Intron Amino Acid Position:
3276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
66.1
42.1
Major BPS
50.3
0.01
1.5
61.7
43.1
Major PPT
68.3
0.41
0.9
65
36
Minor 5ss
42.5
-0.8
3
56.3
47.9
Minor BPS
39.8
-0.7
2
53.71
42

Associated Gene:

Gene:
TRRAP
Ensembl Gene ID:
ENSAPLG00000006552
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020632
6863140 - 6953744
90605