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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_6879717_6880795_R

Intron Information:

Intron Rank:
62
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6879717 - 6880795
Intron Length:
1079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGCTTG
5'SS Class:
major
3'SS Sequence:
TTCTGCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTGTTTTGATT
Flanking Amino Acid:
KIEQRERYKSDSGQQQPSSV
Intron Amino Acid Position:
3246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
66.1
42.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.6
0.8
0.8
79.6
32.5
Minor 5ss
42.5
-0.8
3
56.3
47.9
Minor BPS
60.2
0.4
1.3
73.17
39

Associated Gene:

Gene:
TRRAP
Ensembl Gene ID:
ENSAPLG00000006552
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006923
6863140 - 6953744
90605