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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_6900263_6900768_R

Intron Information:

Intron Rank:
54
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6900263 - 6900768
Intron Length:
506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGACTC
5'SS Class:
strong_major
3'SS Sequence:
TCAATTTTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
ATGGTTTCAATT
Flanking Amino Acid:
EYQLWEDHWIRCSKELNQWE
Intron Amino Acid Position:
2796

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
70.2
40.5
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
77.7
0.62
0.9
73.2
36.9
Minor 5ss
37
-1.5
3.3
52.7
44
Minor BPS
49.8
0.07
1.6
65.34
40.4

Associated Gene:

Gene:
TRRAP
Ensembl Gene ID:
ENSAPLG00000006552
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020632
6863140 - 6953744
90605
ENSAPLT00000006923
6863140 - 6953744
90605