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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_6907255_6908229_R

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6907255 - 6908229
Intron Length:
975

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCAT
5'SS Class:
major
3'SS Sequence:
TTTGTATCCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTTTTTGTATCC
Flanking Amino Acid:
ATAGTAEANTAGTSELVMLS
Intron Amino Acid Position:
2288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
72.5
38.4
Major BPS
100
1.24
0.5
100
0
Major PPT
75.1
0.56
0.8
70
35.6
Minor 5ss
42
-0.9
2.8
58.7
45.8
Minor BPS
48.2
-0.1
2.2
65.98
40.2

Associated Gene:

Gene:
TRRAP
Ensembl Gene ID:
ENSAPLG00000006552
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020632
6863140 - 6953744
90605
ENSAPLT00000006923
6863140 - 6953744
90605