Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_6908377_6909711_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6908377 - 6909711

Intron Length:

1335

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGTTAC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTATCAATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

ACTTCTGTAACT

Flanking Amino Acid:

ATNANPSQLFGTLMILKSAC

Intron Amino Acid Position:

2239

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.7

0.91

0.8

80.2

28.3

Major BPS

96.5

1.15

0.6

34.2

Major PPT

0.63

0.9

75.2

33.5

Minor 5ss

40.6

-1

2.8

49.4

41.4

Minor BPS

64.1

0.52

81.74

40.3

Associated Gene:

Gene:

TRRAP

Ensembl Gene ID:

ENSAPLG00000006552

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020632

6863140 - 6953744

90605

ENSAPLT00000006923

6863140 - 6953744

90605