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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_6916230_6916762_R

Intron Information:

Intron Rank:
36
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6916230 - 6916762
Intron Length:
533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAGTG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTGGAACTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTTTTTTCATT
Flanking Amino Acid:
ESITSVFITKVLDPEKQADM
Intron Amino Acid Position:
1784

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
71.8
38.2
Major BPS
100
1.24
0.5
100
0
Major PPT
57.9
0.18
1
51.6
41.9
Minor 5ss
34.1
-1.8
3.5
47.2
48.2
Minor BPS
61.3
0.44
1.7
78.3
39.3

Associated Gene:

Gene:
TRRAP
Ensembl Gene ID:
ENSAPLG00000006552
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020632
6863140 - 6953744
90605
ENSAPLT00000006923
6863140 - 6953744
90605