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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_6917496_6917787_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6917496 - 6917787
Intron Length:
292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTACGTAAG
5'SS Class:
major
3'SS Sequence:
TCTGTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACCAAA
U12 Branch Point Sequence:
TCTGTTTTTACA
Flanking Amino Acid:
LLAYCLLNYCKRNYGDIELL
Intron Amino Acid Position:
1674

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
71.8
39.8
Major BPS
54.9
0.12
1.2
63
32
Major PPT
88.5
0.87
0.7
83.2
31.9
Minor 5ss
35.7
-1.6
2.9
41.9
39
Minor BPS
54.2
0.12
1.7
65.78
41.1

Associated Gene:

Gene:
TRRAP
Ensembl Gene ID:
ENSAPLG00000006552
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020632
6863140 - 6953744
90605
ENSAPLT00000006923
6863140 - 6953744
90605