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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_6919397_6921421_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6919397 - 6921421
Intron Length:
2025

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTACCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATTAATTTAATT
Flanking Amino Acid:
SLLSPCFQFEEMKICSAIIN
Intron Amino Acid Position:
1498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
82.1
24.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
80
0.68
0.7
75.1
29
Minor 5ss
27.3
-2.6
2.7
30.6
42.8
Minor BPS
65.5
0.57
1.5
80.14
35.6

Associated Gene:

Gene:
TRRAP
Ensembl Gene ID:
ENSAPLG00000006552
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020632
6863140 - 6953744
90605