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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_6919397_6924074_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6919397 - 6924074
Intron Length:
4678

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTACCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATTAATTTAATT
Flanking Amino Acid:
HKGGQRSDGNEMKICSAIIN
Intron Amino Acid Position:
1479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.3
25.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
80
0.68
0.7
75.1
29
Minor 5ss
41.9
-0.9
2.8
53.7
43.8
Minor BPS
65.5
0.57
1.5
80.14
35.6

Associated Gene:

Gene:
TRRAP
Ensembl Gene ID:
ENSAPLG00000006552
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006923
6863140 - 6953744
90605