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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_6921476_6924074_R

Intron Information:

Intron Rank:
30
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6921476 - 6924074
Intron Length:
2599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
GGAGAGCTCTTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCATCCTAATT
Flanking Amino Acid:
HKGGQRSDGNESNSECLRSL
Intron Amino Acid Position:
1480

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.3
25.5
Major BPS
100
1.24
0.5
100
0
Major PPT
49.9
-0
1
43.5
42.9
Minor 5ss
41.9
-0.9
2.8
53.7
43.8
Minor BPS
58.9
0.36
1.7
76.82
40.1

Associated Gene:

Gene:
TRRAP
Ensembl Gene ID:
ENSAPLG00000006552
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020632
6863140 - 6953744
90605