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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_692479_693296_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
692479 - 693296
Intron Length:
818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTAAT
5'SS Class:
major
3'SS Sequence:
TTTCTCTTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
CACTTATTAACG
Flanking Amino Acid:
GSGSTLVDYTSTSSTGGSPV
Intron Amino Acid Position:
1172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
78.1
38.2
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
85
0.79
0.6
84.9
22.7
Minor 5ss
41.9
-0.9
3
59.8
44.7
Minor BPS
55.1
0.02
1.7
57.01
44.4

Associated Gene:

Gene:
RBBP6
Ensembl Gene ID:
ENSAPLG00000009569
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047328
690417 - 713583
23167
ENSAPLT00000022129
690417 - 713583
23167
ENSAPLT00000009988
690417 - 713583
23167