Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_6931116_6931829_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6931116 - 6931829

Intron Length:

714

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

ATACAAATTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACAAAT

U12 Branch Point Sequence:

TCTCCCTATACA

Flanking Amino Acid:

YTMVAVAQQCGPFLLQCYQV

Intron Amino Acid Position:

1046

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.8

79.4

28.8

Major BPS

69.5

0.48

73.5

28.6

Major PPT

64.9

0.34

55.7

42.7

Minor 5ss

32.1

-2

3.1

36.8

41.9

Minor BPS

53.7

0.11

68.86

43.2

Associated Gene:

Gene:

TRRAP

Ensembl Gene ID:

ENSAPLG00000006552

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006923

6863140 - 6953744

90605

ENSAPLT00000020632

6863140 - 6953744

90605