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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_6940135_6940251_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6940135 - 6940251
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAAGCTT
5'SS Class:
major
3'SS Sequence:
TGTCTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TAATAAGTAACT
Flanking Amino Acid:
WGITSCKAPGEAQFIPNKQL
Intron Amino Acid Position:
560

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
68.5
42
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
87.1
0.84
0.7
84.9
30
Minor 5ss
36.2
-1.6
3.6
52.8
45.5
Minor BPS
47.5
-0.1
2.4
72.79
43.1

Associated Gene:

Gene:
TRRAP
Ensembl Gene ID:
ENSAPLG00000006552
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020632
6863140 - 6953744
90605