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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_6949079_6949406_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6949079 - 6949406
Intron Length:
328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTGT
5'SS Class:
strong_major
3'SS Sequence:
TATATTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTTCTTATAT
Flanking Amino Acid:
VQFLQEKPAQQLRKLVLEII
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
72.1
40.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86
0.81
0.8
80.2
36.9
Minor 5ss
44.9
-0.5
3
65
46.2
Minor BPS
64.2
0.52
1.7
80.55
41.4

Associated Gene:

Gene:
TRRAP
Ensembl Gene ID:
ENSAPLG00000006552
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020632
6863140 - 6953744
90605
ENSAPLT00000006923
6863140 - 6953744
90605