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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_6957529_6957752_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6957529 - 6957752
Intron Length:
224

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ATT|GCATGTTAC
5'SS Class:
weak_major
3'SS Sequence:
ATCCGAGCGGCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GCTCCTCTGATT
Flanking Amino Acid:
MCILNSMINVTGE
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.4
0.22
1.4
56.7
37
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
53.7
0.08
1.1
47.1
40
Minor 5ss
38.8
-1.3
3.9
57.4
41.8
Minor BPS
49.3
0.02
1.6
65.77
39.1

Associated Gene:

Gene:
TMEM130
Ensembl Gene ID:
ENSAPLG00000006450
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006677
6957520 - 6965217
7698