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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_6959453_6960117_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
6959453 - 6960117
Intron Length:
665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTGTG
5'SS Class:
major
3'SS Sequence:
ACGCTGCACGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GATTCTGTATCT
Flanking Amino Acid:
RFVYNWDFGDGVYQITKEPF
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.1
67.1
44.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
57.9
0.18
1
50.7
37.7
Minor 5ss
34.5
-1.8
3.5
39.9
46.1
Minor BPS
49.8
0.06
2.2
73.66
43.2

Associated Gene:

Gene:
TMEM130
Ensembl Gene ID:
ENSAPLG00000006450
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006677
6957520 - 6965217
7698