About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_6960288_6962910_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6960288 - 6962910
Intron Length:
2623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTATCCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTATTTTATCC
Flanking Amino Acid:
GDFTTSLELLVIHQLLTGNF
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
70.1
0.45
1.1
68.9
40.7
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
56.4
0.18
1.6
65.97
40.2

Associated Gene:

Gene:
TMEM130
Ensembl Gene ID:
ENSAPLG00000006450
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006677
6957520 - 6965217
7698