About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_6963175_6964232_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6963175 - 6964232
Intron Length:
1058

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTGTAT
U12 Branch Point Sequence:
CACTCCAGGAAT
Flanking Amino Acid:
TYHEIKVWPTGLQPAFFVLL
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.2
38.5
Major BPS
62.7
0.32
1.4
63.4
44
Major PPT
79.9
0.67
0.8
72.3
37.7
Minor 5ss
38.8
-1.3
3
50.2
46.4
Minor BPS
44.7
-0.3
1.9
59
43.7

Associated Gene:

Gene:
TMEM130
Ensembl Gene ID:
ENSAPLG00000006450
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006677
6957520 - 6965217
7698