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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_698720_698798_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
698720 - 698798
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTATTCACAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CTATTTCTAACA
Flanking Amino Acid:
LSISSLLEEKGYQVPVLRQP
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
90.3
22.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
62.9
0.29
1.1
62
43.3
Minor 5ss
45.5
-0.5
3
66.9
44.4
Minor BPS
57.9
0.24
1.7
68.11
38.5

Associated Gene:

Gene:
RBBP6
Ensembl Gene ID:
ENSAPLG00000009569
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047328
690417 - 713583
23167
ENSAPLT00000022129
690417 - 713583
23167
ENSAPLT00000009988
690417 - 713583
23167