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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_698893_700000_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
698893 - 700000
Intron Length:
1108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTTTTGTCCGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
AAGGGTGTATTT
Flanking Amino Acid:
LRAEKPDGPFHDADAVIPPA
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
77.3
32.8
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
81
0.7
0.8
77.5
31.2
Minor 5ss
37.2
-1.4
2.8
47.9
41.8
Minor BPS
35
-1
2.2
46.12
40.6

Associated Gene:

Gene:
RBBP6
Ensembl Gene ID:
ENSAPLG00000009569
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047328
690417 - 713583
23167
ENSAPLT00000022129
690417 - 713583
23167
ENSAPLT00000009988
690417 - 713583
23167