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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_70083_71225_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
70083 - 71225
Intron Length:
1143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCCT
5'SS Class:
strong_major
3'SS Sequence:
TACATCATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
ATATCCTACATC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
75.3
40.8
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
72.8
0.51
1
62.8
42.6
Minor 5ss
40.5
-1.1
3.1
57.5
46.7
Minor BPS
50
-0
2.1
65.29
40.7

Associated Gene:

Gene:
IL21R
Ensembl Gene ID:
ENSAPLG00000015284
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020960
51741 - 71316
19576