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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_703500_710885_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
703500 - 710885
Intron Length:
7386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTATGTAAA
5'SS Class:
major
3'SS Sequence:
ACCTGTTAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TGTCAAATAATT
Flanking Amino Acid:
TEPVSGTSKATANLAEANAS
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
70
35.8
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
63.2
0.3
1
58.2
40.7
Minor 5ss
43.3
-0.7
2.5
56
42.5
Minor BPS
46.9
-0.1
2
70.17
39.9

Associated Gene:

Gene:
RBBP6
Ensembl Gene ID:
ENSAPLG00000009569
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047328
690417 - 713583
23167