About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7063709_7065117_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7063709 - 7065117
Intron Length:
1409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGCTG
5'SS Class:
major
3'SS Sequence:
CTTTCCCTTAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
TTTCCCTTAAAG
Flanking Amino Acid:
TLKDRLESLEHQLRANVSYA
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
64.3
47.1
Major BPS
70
0.5
1
67
39.8
Major PPT
75
0.56
1
74.9
27.7
Minor 5ss
33
-1.9
3.6
46.2
49.1
Minor BPS
76.1
0.68
1.4
78.73
37.2

Associated Gene:

Gene:
NPTX2
Ensembl Gene ID:
ENSAPLG00000006430
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006665
7056041 - 7068563
12523