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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_710923_711584_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
710923 - 711584
Intron Length:
662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACATTT
5'SS Class:
major
3'SS Sequence:
TTTCTTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTCTGTTAAAT
Flanking Amino Acid:
KSHKILETAFRSRTEPVSGT
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.1
77.6
33.4
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
89.6
0.89
0.6
89.2
19.8
Minor 5ss
44
-0.7
3.2
64.8
46.5
Minor BPS
58.1
0.33
2.1
82.38
38.6

Associated Gene:

Gene:
RBBP6
Ensembl Gene ID:
ENSAPLG00000009569
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047328
690417 - 713583
23167
ENSAPLT00000022129
690417 - 713583
23167
ENSAPLT00000009988
690417 - 713583
23167