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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_711624_713581_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
711624 - 713581
Intron Length:
1958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
TTTTCTGTCACA
Flanking Amino Acid:
MTPKSHKILE
Intron Amino Acid Position:
1

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
87.3
27
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
84.3
0.77
0.8
79.7
32.4
Minor 5ss
42.7
-0.8
2.8
59.4
38.1
Minor BPS
55.6
0.17
2.4
78.6
38.6

Associated Gene:

Gene:
RBBP6
Ensembl Gene ID:
ENSAPLG00000009569
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047328
690417 - 713583
23167
ENSAPLT00000022129
690417 - 713583
23167
ENSAPLT00000009988
690417 - 713583
23167