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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7152159_7153357_F

Intron Information:

Intron Rank:
9
Intron Class:
minor-like
Intron Phase:
2
Intron Coordinates:
7152159 - 7153357
Intron Length:
1199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGTCATTT
5'SS Class:
weak_minor
3'SS Sequence:
TTTTGACAGAGAG|T
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTTTTTTTGACA
Flanking Amino Acid:
TSSERLNSTGDSEDASLSRS
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.4
-0
1.1
54.9
39
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
48.1
-0.1
1.8
55.1
44.2
Minor 5ss
54.8
0.16
2.7
69.4
42.5
Minor BPS
79.3
0.92
1
85.48
26.3

Associated Gene:

Gene:
BAIAP2L1
Ensembl Gene ID:
ENSAPLG00000006154
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006414
7128194 - 7159403
31210