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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7154468_7158761_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7154468 - 7158761
Intron Length:
4294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
TTTTGTTTAAGT
Flanking Amino Acid:
PTDRPENVGQKPDMNGIVKP
Intron Amino Acid Position:
464

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.8
1.15
0.6
96.1
12.1
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
95.8
1.03
0.5
92.1
18.3
Minor 5ss
37.4
-1.4
2.8
50.6
45.9
Minor BPS
65.5
0.57
2
87.23
39

Associated Gene:

Gene:
BAIAP2L1
Ensembl Gene ID:
ENSAPLG00000006154
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006414
7128194 - 7159403
31210