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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7158803_7159327_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7158803 - 7159327
Intron Length:
525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATTTT
5'SS Class:
strong_major
3'SS Sequence:
CATTTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTACAT
U12 Branch Point Sequence:
CTTCTAGTAACT
Flanking Amino Acid:
MNGIVKPPFLSGENPFATVK
Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
82.9
29.9
Major BPS
67.6
0.44
1.2
75
40
Major PPT
87.1
0.84
0.7
84.7
29.7
Minor 5ss
55.6
0.19
2.5
75.5
40.6
Minor BPS
48.6
-0
2.2
73.98
42.8

Associated Gene:

Gene:
BAIAP2L1
Ensembl Gene ID:
ENSAPLG00000006154
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006414
7128194 - 7159403
31210