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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7161779_7173834_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7161779 - 7173834
Intron Length:
12056

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATAG
5'SS Class:
strong_major
3'SS Sequence:
TCCGTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
GTGTCTTTGACT
Flanking Amino Acid:
VVVVGGCPACRVGVLEDTFT
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
71
35.5
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
84.4
0.77
0.8
78.8
33.2
Minor 5ss
36.6
-1.5
3.1
46.6
48.7
Minor BPS
75.6
0.89
1.1
83.64
37.6

Associated Gene:

Gene:
BRI3
Ensembl Gene ID:
ENSAPLG00000006151
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006367
7161646 - 7175663
14018